Detailed information of SNP:
|
SNP ID:
sf0915672889(Gbrowse)
Chromosome: chr09 Position: 15672889 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 61.00% | 39.00% |
| All Indica | 793 | 35.69% | 64.31% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 373 | 43.16% | 56.84% |
| Indica II | 211 | 17.54% | 82.46% |
| Indica Intermediate | 209 | 40.67% | 59.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915672889 | A->G | INTERGENIC | None |