Detailed information of SNP:
|
SNP ID:
sf0915708538(Gbrowse)
Chromosome: chr09 Position: 15708538 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 55.59% | 44.41% |
| All Indica | 794 | 88.29% | 11.71% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 208 | 75.96% | 24.04% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915708538 | T->G | INTERGENIC | None |