Detailed information of SNP:
|
SNP ID:
sf0915737722(Gbrowse)
Chromosome: chr09 Position: 15737722 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1306 | 96.17% | 3.83% |
| All Indica | 735 | 94.42% | 5.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 28 | 78.57% | 21.43% |
| Indica I | 354 | 96.33% | 3.67% |
| Indica II | 202 | 91.09% | 8.91% |
| Indica Intermediate | 179 | 94.41% | 5.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 6 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915737722 | G->A | LOC_Os09g26130(LOC_Os09g26130.1) | Synonymous |