Detailed information of SNP:
|
SNP ID:
sf0915746581(Gbrowse)
Chromosome: chr09 Position: 15746581 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 60.13% | 39.87% |
| All Indica | 795 | 96.98% | 3.02% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 30 | 90.00% | 10.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915746581 | A->C | INTERGENIC | None |