Detailed information of SNP:
|
SNP ID:
sf0915759235(Gbrowse)
Chromosome: chr09 Position: 15759235 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 57.02% | 42.98% |
| All Indica | 757 | 93.39% | 6.61% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 357 | 94.68% | 5.32% |
| Indica II | 197 | 90.86% | 9.14% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915759235 | T->C | LOC_Os09g26144(LOC_Os09g26144.1) | INTRON |