Detailed information of SNP:
|
SNP ID:
sf0915799891(Gbrowse)
Chromosome: chr09 Position: 15799891 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 87.78% | 12.22% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 453 | 64.90% | 35.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 307 | 66.12% | 33.88% |
| Tropical Japonica | 84 | 72.62% | 27.38% |
| Japonica Intermediate | 62 | 48.39% | 51.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915799891 | G->A | LOC_Os09g26190(LOC_Os09g26190.1) | UTR_3_PRIME |