Detailed information of SNP:
|
SNP ID:
sf0915813037(Gbrowse)
Chromosome: chr09 Position: 15813037 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.87% | 45.13% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915813037 | G->T | INTERGENIC | None |