Detailed information of SNP:
|
SNP ID:
sf0915814138(Gbrowse)
Chromosome: chr09 Position: 15814138 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1324 | 90.26% | 9.74% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 404 | 70.54% | 29.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 273 | 73.26% | 26.74% |
| Tropical Japonica | 78 | 71.79% | 28.21% |
| Japonica Intermediate | 53 | 54.72% | 45.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915814138 | G->A | INTERGENIC | None |