Detailed information of SNP:
|
SNP ID:
sf0915814901(Gbrowse)
Chromosome: chr09 Position: 15814901 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.10% | 45.90% |
| All Indica | 797 | 91.47% | 8.53% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915814901 | G->A | INTERGENIC | None |