Detailed information of SNP:
|
SNP ID:
sf0915833012(Gbrowse)
Chromosome: chr09 Position: 15833012 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 82.14% | 17.86% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 483 | 50.72% | 49.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 36.11% | 63.89% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915833012 | G->T | INTERGENIC | None |