Detailed information of SNP:
|
SNP ID:
sf0915917133(Gbrowse)
Chromosome: chr09 Position: 15917133 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.18% | 49.82% |
| All Indica | 799 | 80.60% | 19.40% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915917133 | C->T | INTERGENIC | None |