Detailed information of SNP:
|
SNP ID:
sf0915923540(Gbrowse)
Chromosome: chr09 Position: 15923540 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 89.14% | 10.86% |
| All Indica | 798 | 83.21% | 16.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915923540 | A->G | INTERGENIC | None |