Detailed information of SNP:



SNP ID: sf0915940517(Gbrowse)

Chromosome: chr09

Position: 15940517
Major allele: C

Minor allele: G

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of G(minor allele)
All1419 95.49% 4.51%
All Indica799 99.87% 0.13%
All Japonica497 87.93% 12.07%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 48.94% 51.06%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0915940517 C->G LOC_Os09g26390(LOC_Os09g26390.1) INTRON
sf0915940517 C->G LOC_Os09g26390(LOC_Os09g26390.2) INTRON
sf0915940517 C->G LOC_Os09g26390(LOC_Os09g26390.3) INTRON