Detailed information of SNP:
|
SNP ID:
sf0915969057(Gbrowse)
Chromosome: chr09 Position: 15969057 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.24% | 43.76% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915969057 | C->A | INTERGENIC | None |