Detailed information of SNP:
|
SNP ID:
sf0916029540(Gbrowse)
Chromosome: chr09 Position: 16029540 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 86.17% | 13.83% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 452 | 62.39% | 37.61% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 308 | 61.36% | 38.64% |
| Tropical Japonica | 83 | 81.93% | 18.07% |
| Japonica Intermediate | 61 | 40.98% | 59.02% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916029540 | A->G | LOC_Os09g26530(LOC_Os09g26530.1) | Non-Synonymous SNP |