Detailed information of SNP:
|
SNP ID:
sf0916030113(Gbrowse)
Chromosome: chr09 Position: 16030113 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 64.31% | 35.69% |
| All Indica | 767 | 80.44% | 19.56% |
| All Japonica | 448 | 37.72% | 62.28% |
| Aus | 63 | 69.84% | 30.16% |
| Indica I | 365 | 88.49% | 11.51% |
| Indica II | 207 | 69.57% | 30.43% |
| Indica Intermediate | 195 | 76.92% | 23.08% |
| Temperate Japonica | 307 | 39.09% | 60.91% |
| Tropical Japonica | 82 | 17.07% | 82.93% |
| Japonica Intermediate | 59 | 59.32% | 40.68% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916030113 | G->A | LOC_Os09g26530(LOC_Os09g26530.1) | INTRON |