Detailed information of SNP:
|
SNP ID:
sf0916031110(Gbrowse)
Chromosome: chr09 Position: 16031110 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 76.58% | 23.42% |
| All Indica | 791 | 59.42% | 40.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 370 | 44.05% | 55.95% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 208 | 65.38% | 34.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916031110 | T->G | LOC_Os09g26530(LOC_Os09g26530.1) | INTRON |