Detailed information of SNP:
|
SNP ID:
sf0916035139(Gbrowse)
Chromosome: chr09 Position: 16035139 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 93.83% | 6.17% |
| All Indica | 776 | 89.05% | 10.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 201 | 80.10% | 19.90% |
| Indica Intermediate | 205 | 85.37% | 14.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916035139 | C->T | INTERGENIC | None |