Detailed information of SNP:
|
SNP ID:
sf0916035408(Gbrowse)
Chromosome: chr09 Position: 16035408 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 94.85% | 5.15% |
| All Indica | 779 | 91.14% | 8.86% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 96.75% | 3.25% |
| Indica II | 202 | 83.66% | 16.34% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916035408 | C->A | INTERGENIC | None |