Detailed information of SNP:
|
SNP ID:
sf0916046183(Gbrowse)
Chromosome: chr09 Position: 16046183 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 82.19% | 17.81% |
| All Indica | 784 | 70.41% | 29.59% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 58.71% | 41.29% |
| Indica II | 204 | 88.73% | 11.27% |
| Indica Intermediate | 207 | 73.43% | 26.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916046183 | A->G | INTERGENIC | None |