Detailed information of SNP:
|
SNP ID:
sf0916046533(Gbrowse)
Chromosome: chr09 Position: 16046533 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 92.47% | 7.53% |
| All Indica | 747 | 87.15% | 12.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 334 | 79.34% | 20.66% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 201 | 88.56% | 11.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916046533 | C->T | INTERGENIC | None |