Detailed information of SNP:
|
SNP ID:
sf0916080852(Gbrowse)
Chromosome: chr09 Position: 16080852 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1245 | 79.60% | 20.40% |
| All Indica | 793 | 98.49% | 1.51% |
| All Japonica | 334 | 32.34% | 67.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 215 | 30.23% | 69.77% |
| Tropical Japonica | 66 | 22.73% | 77.27% |
| Japonica Intermediate | 53 | 52.83% | 47.17% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916080852 | G->A | LOC_Os09g26560(LOC_Os09g26560.2) | INTRON |
| sf0916080852 | G->A | LOC_Os09g26560(LOC_Os09g26560.1) | INTRON |