Detailed information of SNP:
|
SNP ID:
sf0916104871(Gbrowse)
Chromosome: chr09 Position: 16104871 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 88.72% | 11.28% |
| All Indica | 798 | 80.58% | 19.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 68.45% | 31.55% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916104871 | G->A | INTERGENIC | None |