Detailed information of SNP:
|
SNP ID:
sf0916169021(Gbrowse)
Chromosome: chr09 Position: 16169021 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1278 | 96.56% | 3.44% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 366 | 87.98% | 12.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 247 | 95.14% | 4.86% |
| Tropical Japonica | 65 | 61.54% | 38.46% |
| Japonica Intermediate | 54 | 87.04% | 12.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916169021 | C->T | INTERGENIC | None |