Detailed information of SNP:
|
SNP ID:
sf0916207686(Gbrowse)
Chromosome: chr09 Position: 16207686 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.30% | 18.70% |
| All Indica | 797 | 73.78% | 26.22% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 57.75% | 42.25% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916207686 | G->T | LOC_Os09g26680(LOC_Os09g26680.1) | INTRON |