Detailed information of SNP:
|
SNP ID:
sf0916230493(Gbrowse)
Chromosome: chr09 Position: 16230493 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 94.95% | 5.05% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 484 | 88.64% | 11.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 82 | 58.54% | 41.46% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916230493 | T->G | INTERGENIC | None |