Detailed information of SNP:
|
SNP ID:
sf0916233297(Gbrowse)
Chromosome: chr09 Position: 16233297 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 89.02% | 10.98% |
| All Indica | 764 | 80.37% | 19.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 66.38% | 33.62% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 201 | 86.07% | 13.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916233297 | G->C | INTERGENIC | None |