Detailed information of SNP:



SNP ID: sf0916241444(Gbrowse)

Chromosome: chr09

Position: 16241444
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1406 83.64% 16.36%
All Indica787 71.28% 28.72%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I369 52.85% 47.15%
Indica II212 96.70% 3.30%
Indica Intermediate206 78.16% 21.84%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 92.68% 7.32%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0916241444 C->T INTERGENIC None