Detailed information of SNP:
|
SNP ID:
sf0916241816(Gbrowse)
Chromosome: chr09 Position: 16241816 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 79.18% | 20.82% |
| All Indica | 779 | 71.76% | 28.24% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 362 | 55.52% | 44.48% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 204 | 77.45% | 22.55% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916241816 | T->C | INTERGENIC | None |