Detailed information of SNP:
|
SNP ID:
sf0916242026(Gbrowse)
Chromosome: chr09 Position: 16242026 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 79.64% | 20.36% |
| All Indica | 781 | 65.04% | 34.96% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 46.03% | 53.97% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916242026 | T->C | INTERGENIC | None |