Detailed information of SNP:
|
SNP ID:
sf0916242237(Gbrowse)
Chromosome: chr09 Position: 16242237 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 50.81% | 49.19% |
| All Indica | 795 | 79.87% | 20.13% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 210 | 76.19% | 23.81% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916242237 | T->C | INTERGENIC | None |