Detailed information of SNP:
|
SNP ID:
sf0916243058(Gbrowse)
Chromosome: chr09 Position: 16243058 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1195 | 72.22% | 27.78% |
| All Indica | 593 | 52.61% | 47.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 23.73% | 76.27% |
| Indica I | 296 | 35.47% | 64.53% |
| Indica II | 137 | 78.10% | 21.90% |
| Indica Intermediate | 160 | 62.50% | 37.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 32 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916243058 | A->G | INTERGENIC | None |