Detailed information of SNP:
|
SNP ID:
sf0916258463(Gbrowse)
Chromosome: chr09 Position: 16258463 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.96% | 47.04% |
| All Indica | 798 | 26.94% | 73.06% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 41.44% | 58.56% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 211 | 23.70% | 76.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916258463 | T->C | INTERGENIC | None |