Detailed information of SNP:
|
SNP ID:
sf0916258555(Gbrowse)
Chromosome: chr09 Position: 16258555 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 55.38% | 44.62% |
| All Indica | 790 | 27.47% | 72.53% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 15 | 6.67% | 93.33% |
| Indica I | 373 | 41.82% | 58.18% |
| Indica II | 212 | 5.19% | 94.81% |
| Indica Intermediate | 205 | 24.39% | 75.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916258555 | G->A | INTERGENIC | None |