Detailed information of SNP:
|
SNP ID:
sf0916299566(Gbrowse)
Chromosome: chr09 Position: 16299566 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 58.72% | 41.28% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 487 | 3.49% | 96.51% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 327 | 4.89% | 95.11% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916299566 | A->T | INTERGENIC | None |