Detailed information of SNP:
|
SNP ID:
sf0916331389(Gbrowse)
Chromosome: chr09 Position: 16331389 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1208 | 85.10% | 14.90% |
| All Indica | 596 | 71.81% | 28.19% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 321 | 77.26% | 22.74% |
| Indica II | 111 | 51.35% | 48.65% |
| Indica Intermediate | 164 | 75.00% | 25.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916331389 | C->A | LOC_Os09g26880(LOC_Os09g26880.3) | INTRON |
| sf0916331389 | C->A | LOC_Os09g26880(LOC_Os09g26880.1) | INTRON |
| sf0916331389 | C->A | LOC_Os09g26880(LOC_Os09g26880.4) | INTRON |