Detailed information of SNP:
|
SNP ID:
sf0916341757(Gbrowse)
Chromosome: chr09 Position: 16341757 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 74.01% | 25.99% |
| All Indica | 797 | 56.09% | 43.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 68.98% | 31.02% |
| Indica II | 212 | 23.58% | 76.42% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916341757 | G->T | INTERGENIC | None |