Detailed information of SNP:
|
SNP ID:
sf0916424613(Gbrowse)
Chromosome: chr09 Position: 16424613 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 82.49% | 17.51% |
| All Indica | 792 | 77.40% | 22.60% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 372 | 69.89% | 30.11% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916424613 | A->G | INTERGENIC | None |