Detailed information of SNP:
|
SNP ID:
sf0916497844(Gbrowse)
Chromosome: chr09 Position: 16497844 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 97.09% | 2.91% |
| All Indica | 795 | 97.86% | 2.14% |
| All Japonica | 494 | 95.75% | 4.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916497844 | A->G | LOC_Os09g27130(LOC_Os09g27130.1) | Synonymous |