Detailed information of SNP:
|
SNP ID:
sf0916508096(Gbrowse)
Chromosome: chr09 Position: 16508096 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 68.15% | 31.85% |
| All Indica | 797 | 45.29% | 54.71% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 60.27% | 39.73% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 209 | 45.93% | 54.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916508096 | C->T | INTERGENIC | None |