Detailed information of SNP:
|
SNP ID:
sf0916566593(Gbrowse)
Chromosome: chr09 Position: 16566593 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1207 | 88.48% | 11.52% |
| All Indica | 593 | 77.07% | 22.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 270 | 97.04% | 2.96% |
| Indica II | 168 | 45.83% | 54.17% |
| Indica Intermediate | 155 | 76.13% | 23.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916566593 | A->G | INTERGENIC | None |