Detailed information of SNP:
|
SNP ID:
sf0916567530(Gbrowse)
Chromosome: chr09 Position: 16567530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1307 | 83.78% | 16.22% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 388 | 49.74% | 50.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 240 | 67.08% | 32.92% |
| Tropical Japonica | 91 | 9.89% | 90.11% |
| Japonica Intermediate | 57 | 40.35% | 59.65% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916567530 | C->T | INTERGENIC | None |