Detailed information of SNP:
|
SNP ID:
sf0916576383(Gbrowse)
Chromosome: chr09 Position: 16576383 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 91.35% | 8.65% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 467 | 76.02% | 23.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 309 | 70.23% | 29.77% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916576383 | G->A | INTERGENIC | None |