Detailed information of SNP:
|
SNP ID:
sf0916605574(Gbrowse)
Chromosome: chr09 Position: 16605574 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 82.57% | 17.43% |
| All Indica | 780 | 69.10% | 30.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 53.85% | 46.15% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 203 | 69.95% | 30.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916605574 | C->T | LOC_Os09g27310(LOC_Os09g27310.1) | INTRON |