Detailed information of SNP:
|
SNP ID:
sf0916643407(Gbrowse)
Chromosome: chr09 Position: 16643407 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1273 | 75.49% | 24.51% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 358 | 18.44% | 81.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 240 | 26.25% | 73.75% |
| Tropical Japonica | 71 | 1.41% | 98.59% |
| Japonica Intermediate | 47 | 4.26% | 95.74% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916643407 | T->C | INTERGENIC | None |