Detailed information of SNP:
SNP ID:
sf0916681400(Gbrowse)
Chromosome: chr09 Position: 16681400 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 63.28% | 36.72% |
All Indica | 799 | 96.37% | 3.63% |
All Japonica | 497 | 6.04% | 93.96% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 96.53% | 3.47% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 96.21% | 3.79% |
Temperate Japonica | 335 | 6.57% | 93.43% |
Tropical Japonica | 94 | 4.26% | 95.74% |
Japonica Intermediate | 68 | 5.88% | 94.12% |
Group VI/Aromatic | 14 | 57.14% | 42.86% |
Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0916681400 | A->G | INTERGENIC | None |