Detailed information of SNP:



SNP ID: sf0916681400(Gbrowse)

Chromosome: chr09

Position: 16681400
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 63.28% 36.72%
All Indica799 96.37% 3.63%
All Japonica497 6.04% 93.96%
Aus67 100.00% 0.00%
Indica I375 96.53% 3.47%
Indica II213 96.24% 3.76%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 6.57% 93.43%
Tropical Japonica94 4.26% 95.74%
Japonica Intermediate68 5.88% 94.12%
Group VI/Aromatic14 57.14% 42.86%
Intermediate42 54.76% 45.24%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0916681400 A->G INTERGENIC None