Detailed information of SNP:
|
SNP ID:
sf0916688642(Gbrowse)
Chromosome: chr09 Position: 16688642 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 97.17% | 2.83% |
| All Indica | 772 | 97.15% | 2.85% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 56 | 71.43% | 28.57% |
| Indica I | 359 | 96.94% | 3.06% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 202 | 96.53% | 3.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916688642 | G->A | INTERGENIC | None |