Detailed information of SNP:
|
SNP ID:
sf0916692880(Gbrowse)
Chromosome: chr09 Position: 16692880 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1261 | 95.24% | 4.76% |
| All Indica | 646 | 96.75% | 3.25% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 293 | 98.98% | 1.02% |
| Indica II | 190 | 91.05% | 8.95% |
| Indica Intermediate | 163 | 99.39% | 0.61% |
| Temperate Japonica | 334 | 93.11% | 6.89% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916692880 | C->T | INTERGENIC | None |