Detailed information of SNP:
|
SNP ID:
sf0916697835(Gbrowse)
Chromosome: chr09 Position: 16697835 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 66.97% | 33.03% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 421 | 7.36% | 92.64% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 277 | 6.50% | 93.50% |
| Tropical Japonica | 88 | 4.55% | 95.45% |
| Japonica Intermediate | 56 | 16.07% | 83.93% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916697835 | T->C | INTERGENIC | None |