Detailed information of SNP:
|
SNP ID:
sf0916751682(Gbrowse)
Chromosome: chr09 Position: 16751682 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 76.04% | 23.96% |
| All Indica | 795 | 65.79% | 34.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 49.20% | 50.80% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916751682 | A->G | INTERGENIC | None |